rs167679 chr7:95684258 A>G
- Sequence
caaaagagatattccatgattaaa[A/G]tggcccctacaggacaaattgaga
- ASB in cell types
- THP-1 (acute monocytic leukemia) pancreas HeLa S3 (cervical adenocarcinoma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN REST_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.32 | 2.03 | 1.69 | 2.64 | Concordant | |||
| RAD21_HUMAN | 0.19 | 2.52 | 1.44 | n/a | n/a | |||
| REST_HUMAN | -3.25 | 3.26 | 1.25 | n/a | No Hit | |||
| SMC3_HUMAN | 0.18 | 2.76 | 2.75 | n/a | n/a | |||
| TCF21_HUMAN | -4.25 | 2.41 | 1.50 | n/a | No Hit |
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Motif analysis
