rs168222 chr5:73565634 G>A
- Sequence
acggttctgggtcaccagagcaga[G/A]gaagccccaatttcgccctccggt
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN NR2C1_HUMAN SRF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.46 | -4.72 | 2.00 | 2.31 | Discordant | |||
| NR2C1_HUMAN | 2.68 | -0.44 | 1.67 | n/a | No Hit | |||
| SRF_HUMAN | 2.06 | -1.84 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.65 | -0.79 | 1.75 | n/a | No Hit | |||
| SP1_HUMAN | 2.23 | -1.06 | 1.75 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Vagina, Whole_Blood