rs16828576 chr1:23559660 C>T
- Sequence
tccggctggtctgacgccgaagac[C/T]gcggagccgcggattcaaagaatg
- ASB in cell types
- macrophages form periferal blood HCASMC (Human coronary artery smooth muscle cells) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TCF21_HUMAN SPI1_HUMAN FOXP1_HUMAN MTG8_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.13 | n/a | 2.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.47 | 0.69 | 1.43 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.49 | 0.06 | 2.00 | n/a | No Hit | |||
| MTG8_HUMAN | 1.48 | -0.65 | 1.50 | n/a | n/a |
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