rs16839646 chr2:207331092 T>G
- Sequence
agctcgtgactaatgctctctgag[T/G]agcgcaggggcagcttggcaaacc
- ASB in cell types
- A549 (lung carcinoma) BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GCR_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.00 | 0.50 | 1.20 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.19 | -4.14 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, hdl cholesterol, major depressive disorder (broad definition), major depressive disorder (broad definition) (males)