rs168448 chr20:64221222 A>T

Sequence
acacatgcgagtgcctgtcaggac[A/T]ggattttgagctctggttacagca
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
RARA_HUMAN NFIL3_HUMAN NR2F6_HUMAN BCL6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN n/a 3.59 1.003.9·10-5 2.00 -0.54 Weak Discordant
NFIL3_HUMAN n/a 2.79 1.002.0·10-4 1.50 n/a No Hit
NR2F6_HUMAN -3.23 2.20 1.001.2·10-3 1.50 n/a No Hit
BCL6_HUMAN n/a 2.88 1.000.01 1.50 n/a No Hit
TEAD3_HUMAN -1.48 1.78 1.000.03 1.00 n/a No Hit
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Motif analysis

RARA_HUMAN Weak Discordant
RARA_HUMAN pic

Genetic associations

GRASP depression scale of the revised neo personality inventory
GTEx eQTL Artery_Aorta,  Esophagus_Muscularis,  Testis,  Thyroid

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