rs16847894 chr2:196242481 G>A
- Sequence
tcaagtatgttccccttttcagtc[G/A]aaactaatatgagtcaaacagagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- FOXK2_HUMAN SPI1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.74 | -4.65 | 1.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.46 | 0.40 | 1.90 | n/a | No Hit | |||
| STAT1_HUMAN | 2.13 | -4.47 | 3.00 | 2.94 | Discordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood