rs16853822 chr1:204481213 C>G
- Sequence
ccctcctgctcactcactccctca[C/G]cagctctcccagaagagaagagag
- ASB in cell types
- macrophages form periferal blood GM12878 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| macrophages form periferal blood | 2.42 | -1.52 | 3.00 | |||
| GM12878 (female B-cells lymphoblastoid cell line) | 0.94 | 0.62 | 1.09 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood