rs16859871 chr3:112632829 G>A

Sequence
tgcaggactcattctctaacttcc[G/A]gccctccacgttctggccccgggc
ASB for transcription factors
GLIS1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GLIS1_HUMAN 1.78 -0.34 8.0·10-30.93 1.75 -1.73 Weak Concordant
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Motif analysis

GLIS1_HUMAN Weak Concordant
GLIS1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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