rs16879317 chr4:11232275 G>C
- Sequence
ttcctcttgataataaacaactta[G/C]cccaaggcctagtgtatagagtta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.05 | 0.07 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.50 | n/a | 2.00 | -3.28 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, aortic valve calcium, ldl cholesterol, refractive error, total cholesterol, triglycerides