rs16900003 chr8:124751642 G>A
- Sequence
actgactcttagggaaatgacgtg[G/A]cttggccaatgccacactgcccag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium) CD14+ monocytes pancreas
- ASB for transcription factors
- GCR_HUMAN STAT1_HUMAN CREB1_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.73 | -0.15 | 1.20 | n/a | No Hit | |||
| STAT1_HUMAN | 3.23 | -1.26 | 2.00 | -0.14 | Weak Concordant | |||
| CREB1_HUMAN | 0.95 | n/a | 1.50 | 1.17 | Weak Discordant | |||
| PKNX1_HUMAN | 2.67 | -2.34 | 1.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.93 | -4.19 | 2.62 | n/a | No Hit |
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Motif analysis
