rs169224 chr1:234545049 T>C
- Sequence
tgtgtgtgtgtgtgtgtgtgtgcg[T/C]gcgctgtatttccacctctgccct
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN366_HUMAN ZN398_HUMAN ZN394_HUMAN ZEB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN366_HUMAN | 2.77 | n/a | 3.00 | n/a | n/a | |||
| ZN398_HUMAN | 2.43 | n/a | 4.00 | n/a | n/a | |||
| ZN394_HUMAN | 2.59 | n/a | 3.00 | n/a | No Hit | |||
| ZEB1_HUMAN | 3.13 | n/a | 3.00 | n/a | No Hit | |||
| ZBT26_HUMAN | 2.20 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid