rs16939395 chr8:77000651 T>A
- Sequence
tgtgcacagggaggataggctgtt[T/A]atctctgcaggctcaggaaggcag
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- GATA1_HUMAN TYY1_HUMAN RFOX2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.79 | -5.12 | 2.00 | -3.13 | Concordant | |||
| TYY1_HUMAN | 1.44 | -0.20 | 1.50 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.54 | -0.33 | 1.62 | n/a | n/a | |||
| RAD21_HUMAN | 1.90 | 0.44 | 1.76 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
