rs16941107 chr17:46822393 C>T

Sequence
gcatcctggaaatgcaggaagccc[C/T]tgacctgcaccgagtaagcgcata
ASB in cell types
LNCaP (prostate carcinoma) foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.90 0.76 0.020.61 1.40 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Whole_Blood

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