rs16948722 chr17:47843142 C>T
- Sequence
taatgtcattccagaagcaaacat[C/T]gaagctgcgtgctgagaaatctgg
- ASB in cell types
- MOLM-13(acute monocytic leukemia(AML), Homo sapiens) upper lobe of left lung Peyer's patch MCF7 (Invasive ductal breast carcinoma)
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MOLM-13(acute monocytic leukemia(AML), Homo sapiens) | -4.08 | 2.76 | 1.33 | |||
| upper lobe of left lung | -0.66 | 2.98 | 1.17 | |||
| Peyer's patch | -0.35 | 0.95 | 1.00 | |||
| MCF7 (Invasive ductal breast carcinoma) | 0.66 | 0.13 | 1.70 | |||
| esophagus squamous epithelium | -0.80 | 1.15 | 1.17 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood