rs16951723 chr15:68277673 T>C
- Sequence
actacgcgcagcagaacctttctc[T/C]accgggcccgcgtgtgcccgccgg
- ASB in cell types
- CD34+ hematopoietic stem cells HepG2 (hepatoblastoma) RPMI8226 (Plasma cell myeloma) germinal center CD77+ B cells
- ASB for transcription factors
- IKZF1_HUMAN TIF1B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -4.24 | 2.47 | 1.50 | n/a | n/a | |||
| TIF1B_HUMAN | 2.88 | 0.21 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting blood glucose, homa-b, ldl cholesterol
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Kidney_Cortex, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Uterus, Vagina, Whole_Blood