rs16963336 chr15:50134821 A>T

Sequence
aatggctaggggaatgttggtggc[A/T]ttgacaaaaataaggagagtgaac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ATF3_HUMAN SOX6_HUMAN SMCE1_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN -4.57 2.64 1.002.9·10-5 2.00 n/a No Hit
SOX6_HUMAN n/a 3.56 1.003.2·10-4 2.00 n/a No Hit
SMCE1_HUMAN -5.49 3.16 1.000.01 2.00 n/a n/a
ARI1B_HUMAN n/a 2.39 1.000.01 2.00 n/a n/a
ATF2_HUMAN 0.83 1.59 0.520.03 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  height,  infant head circumference,  ldl cholesterol,  total cholesterol
GTEx eQTL Cells_Cultured_fibroblasts,  Skin_Sun_Exposed_Lower_leg

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