rs16965650 chr15:44666934 C>T
- Sequence
gttatactgcctcctagaagaaac[C/T]gaaactctagggcactatagaaaa
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.58 | 0.92 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.03 | -0.98 | 2.00 | 0.85 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), biploar disorder (bipolar schizoaffective disorder), major depressive disorder, years of education
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid