rs16970080 chr17:50056099 G>C

Sequence
tcctgtcctccttgcggtcgaccg[G/C]tgcgcttgccagatccgccgcgaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
RUNX2_HUMAN ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RUNX2_HUMAN n/a 2.69 1.005.8·10-3 2.00 n/a No Hit
ANDR_HUMAN 2.21 -0.31 7.7·10-31.00 1.83 n/a No Hit
CTCF_HUMAN 1.07 0.57 9.4·10-31.00 1.31 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum

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