rs16976646 chr15:55907956 C>G
- Sequence
ctgtggaaactaatccttgagtca[C/G]gatcataatattccattggcattc
- ASB in cell types
- A549 (lung carcinoma) EA.hy 926 (human umbilical vein endothelial cell line)
- ASB for transcription factors
- JUN_HUMAN EP300_HUMAN HIF1A_HUMAN FOSL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.77 | 0.19 | 1.25 | -1.55 | Weak Concordant | |||
| EP300_HUMAN | 1.31 | -0.23 | 1.21 | n/a | n/a | |||
| HIF1A_HUMAN | 2.51 | -4.75 | 2.00 | n/a | No Hit | |||
| FOSL2_HUMAN | 2.16 | -1.83 | 1.00 | -1.31 | Weak Concordant | |||
| TF65_HUMAN | 1.94 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
