rs16979477 chr19:14136720 T>C

Sequence
ccgatcggcgcgcgcccagactcc[T/C]cggaccaatcagcggagctccctc
ASB in cell types
monocytes from periferal blood foreskin keratinocyte
ASB for transcription factors
SRBP2_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 2.65 -0.14 0.021.00 3.00 n/a No Hit
CTCF_HUMAN 0.80 0.27 0.020.92 1.22 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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