rs16981113 chr19:16111486 A>C
- Sequence
gcgcgtgcgcacgcaccccaagcc[A/C]cgccccgccaggctgccggcgcgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) GM10847 (female B-cells Lymphoblastoid Cell Lines) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN TRI22_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.77 | 0.54 | 1.11 | n/a | No Hit | |||
| STAT1_HUMAN | 1.56 | -0.03 | 2.50 | n/a | No Hit | |||
| TRI22_HUMAN | 1.64 | -0.63 | 1.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.07 | n/a | 3.00 | -3.78 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood