rs16985457 chr19:54190483 G>C
- Sequence
gcccgagcggagagtggacggcgg[G/C]tgtccagggggcggggctttcggc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MDA-MB-231 (breast adenocarcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN MEIS2_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.01 | 1.94 | 2.00 | n/a | n/a | |||
| MEIS2_HUMAN | -2.15 | 2.95 | 2.00 | 3.59 | Concordant | |||
| ANDR_HUMAN | 2.64 | 1.60 | 1.67 | n/a | No Hit | |||
| JUN_HUMAN | -0.10 | 1.68 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.83 | -0.87 | 2.00 | n/a | No Hit |
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Motif analysis
