rs16998871 chr20:54061593 C>A

Sequence
gagtttttattccctggtagtaga[C/A]gcattgagcaattagatattgagg
ASB in cell types
SUM159PT (Triple negative breast cancer)
ASB for transcription factors
CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 1.83 -0.61 2.8·10-31.00 1.00 0.40 Weak Discordant
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Motif analysis

CEBPB_HUMAN Weak Discordant
CEBPB_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  fasting insulin,  hdl cholesterol,  homa-ir,  hypertension (early onset hypertension),  lp-pla2 mass,  major depressive disorder,  panic disorder,  waist hip ratio
GTEx eQTL Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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