rs17000196 chr4:75069971 C>T

Sequence
tccccaagaactggccacattctc[C/T]tccagagaccaaagtcatcttact
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
NFAC3_HUMAN COT1_HUMAN ELF1_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFAC3_HUMAN 3.63 -3.30 4.3·10-91.00 1.00 -2.56 Concordant
COT1_HUMAN 2.68 -2.33 6.1·10-41.00 1.00 n/a No Hit
ELF1_HUMAN 2.90 n/a 1.4·10-31.00 1.00 n/a No Hit
IKZF1_HUMAN 1.83 -1.78 0.021.00 1.25 n/a n/a
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Motif analysis

NFAC3_HUMAN Concordant
NFAC3_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  microalbuminuria,  urinary albumin-to-creatinine ratio,  years of education
GTEx eQTL Colon_Transverse,  Esophagus_Mucosa,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Stomach

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