rs17011949 chr1:208108002 T>G
- Sequence
agtcatttacttaagaaatactct[T/G]atttaaaggtgactcacactgtgt
- ASB in cell types
- MCF10A (breast epithelial cells) Mel270 (Uveal melanoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- NCOA3_HUMAN SMCA4_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOA3_HUMAN | -1.93 | 1.93 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 0.45 | 2.07 | 3.00 | n/a | n/a | |||
| GCR_HUMAN | 0.54 | 0.82 | 1.00 | n/a | No Hit |
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