rs17024303 chr3:87350833 A>G

Sequence
ttaatcaccgtggtgctcttggat[A/G]gtgcctcaagccttcgtgcagttt
ASB in cell types
HeLa (cervical adenocarcinoma) 22RV1 (prostate carcinoma) IMR90 (lung fibroblasts)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.91 0.33 2.6·10-41.00 1.33 n/a No Hit
ANDR_HUMAN 2.35 -1.54 6.3·10-31.00 1.83 1.52 Weak Discordant
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Motif analysis

ANDR_HUMAN Weak Discordant
ANDR_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Esophagus_Muscularis,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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