rs17029450 chr3:32422385 T>C

Sequence
gggtgccaggcctcctgctgggac[T/C]ggccccacagcttctccaaatatt
ASB in cell types
LNCaP (prostate carcinoma) breast tumor CD14+ monocytes NUGC4 (Signet ring cell gastric adenocarcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN A2NVP9_HUMAN HNF4A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.84 1.78 1.007.8·10-31 1.78 n/a No Hit
ANDR_HUMAN 0.57 1.62 1.003.5·10-5 2.72 n/a No Hit
A2NVP9_HUMAN -0.58 1.70 1.003.7·10-3 1.50 n/a n/a
HNF4A_HUMAN -4.93 2.83 1.005.8·10-3 2.00 n/a No Hit
STAT1_HUMAN 1.89 -0.79 7.7·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  mitral annular calcium
GTEx eQTL Brain_Cerebellar_Hemisphere,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis

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