rs17030480 chr12:100734017 C>T
- Sequence
gcttgtggactcacttttctggat[C/T]gccctcttgtggatttctactgct
- ASB in cell types
- T47D (invasive ductal carcinoma) GM12892 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.04 | -0.10 | 1.51 | -1.23 | Weak Concordant | |||
| STAG1_HUMAN | 1.89 | -0.12 | 1.72 | n/a | n/a |
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Motif analysis
