rs17033674 chr2:107026184 T>C

Sequence
agtcattgtgtccactgtctcaca[T/C]ctcggacttgggagccttgagctg
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
EP300_HUMAN JUN_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN 2.31 0.38 1.6·10-81.00 2.11 n/a n/a
JUN_HUMAN 1.87 0.13 1.8·10-51.00 2.12 n/a No Hit
GCR_HUMAN 1.85 0.02 3.8·10-31.00 2.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellum,  Brain_Frontal_Cortex_BA9

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