rs17042275 chr2:21395562 A>G
- Sequence
gccccaggaagaggcagctctggg[A/G]cctctagtggtcactgtctgtctc
- ASB in cell types
- liver GM02255 (Lymphoblastoid Cell Lines) GM18486 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.83 | -2.22 | 1.50 | -0.05 | Weak Concordant | |||
| RAD21_HUMAN | 3.99 | -4.13 | 1.00 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
