rs17049785 chr2:58862494 T>C
- Sequence
tgacaaatatgagtcataaaacca[T/C]gtaggagttgaggtgggaagctga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- IKZF2_HUMAN RUNX3_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -1.25 | 1.38 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | -2.43 | 2.54 | 1.00 | 4.17 | Concordant | |||
| COT1_HUMAN | -2.34 | 2.15 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), bipolar disorder, college completion, comorbid depressive syndrome and alcohol dependence, microalbuminuria, salmonella-induced pyroptosis