rs17057781 chr5:160419067 A>G
- Sequence
cccaagtccatccgacagaatcca[A/G]gccaatctcgtaatgtttacttcc
- ASB in cell types
- breast tumor GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN FOXK2_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.03 | -5.54 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.08 | -1.50 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -2.49 | 1.60 | 1.50 | n/a | No Hit | |||
| BRD2_HUMAN | -0.10 | 0.89 | 2.00 | n/a | n/a | |||
| ZFX_HUMAN | -0.17 | 1.86 | 1.00 | 3.87 | Concordant |
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Motif analysis
Genetic associations
GRASP autism, hdl cholesterol, height, obesity with early age of onset (age >2), rheumatoid arthritis, simpson-angus scale
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood