rs17068584 chr18:61589211 C>T

Sequence
ggagtgaccctttggtgacttaaa[C/T]gtaaatctggtaacttcctcttct
ASB in cell types
CD14+ monocytes K562 (myelogenous leukemia) macrophages
ASB for transcription factors
STAT1_HUMAN CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.58 n/a 3.5·10-41.00 2.00 n/a No Hit
CEBPB_HUMAN 1.87 -1.08 6.1·10-41.00 1.60 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP childhood acute lymphoblastic leukemia,  height,  major depressive disorder (broad definition),  major depressive disorder (broad definition) (females),  major depressive disorder (broad definition) (males)
GTEx eQTL Artery_Aorta,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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