rs17073338 chr6:144087998 G>A
- Sequence
ggaggacagagtgataagagggac[G/A]cctagaggacaagataacaactga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN TRI22_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.31 | 3.03 | 2.17 | 1.94 | Weak Concordant | |||
| IKZF2_HUMAN | -3.64 | 3.69 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | n/a | 3.58 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 3.15 | 2.00 | n/a | n/a | |||
| SMCA5_HUMAN | -3.08 | 2.96 | 1.00 | n/a | n/a |
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Motif analysis
