rs17078191 chr5:176389211 C>A
- Sequence
aggaagacctcgactcgacctacc[C/A]tcgccgccctccctccgctgtgat
- ASB in cell types
- K562 (myelogenous leukemia) primary B-CLL cells 22RV1 (prostate carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- BRD4_HUMAN ANDR_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.74 | 0.26 | 1.38 | n/a | n/a | |||
| ANDR_HUMAN | 2.81 | 0.04 | 1.58 | n/a | No Hit | |||
| GCR_HUMAN | 0.41 | 0.91 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Muscle_Skeletal, Whole_Blood