rs17078779 chr13:33207759 C>G

Sequence
acatggattgttgggtcaattctt[C/G]ccatatggtgttgcaagtctttgc
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells) macrophages
ASB for transcription factors
TCF21_HUMAN CEBPB_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.23 n/a 1.9·10-41.00 2.00 3.60 Discordant
CEBPB_HUMAN 2.76 0.28 0.010.83 1.75 n/a No Hit
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Motif analysis

TCF21_HUMAN Discordant
TCF21_HUMAN pic

Genetic associations

GRASP college completion infant head circumference
GTEx eQTL Artery_Tibial Muscle_Skeletal Testis

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