rs170909 chr12:92445828 C>T
- Sequence
ctctttggcacaagttggagtctc[C/T]ggcatttgaaaatggaagaggcaa
- ASB in cell types
- primary B-CLL cells GM01310 ( Transformed lymphovlasoid cell line ) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BRD4_HUMAN AHR_HUMAN SMCA5_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | n/a | 1.80 | 2.00 | n/a | n/a | |||
| AHR_HUMAN | -1.42 | 2.09 | 1.00 | n/a | No Hit | |||
| SMCA5_HUMAN | -2.23 | 2.61 | 1.00 | n/a | n/a | |||
| NFAC3_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4