rs17098224 chr5:142187850 G>T
- Sequence
gtggttacatcatgtgtttatctg[G/T]ttacttgtttcatatctggctcaa
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.70 | 3.56 | 1.33 | 5.26 | Concordant | |||
| FOXA1_HUMAN | -0.87 | 1.26 | 1.50 | 2.57 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary, Skin_Sun_Exposed_Lower_leg, Whole_Blood