rs17100416 chr5:143595763 C>T
- Sequence
ctgctttttctgtgggattctagc[C/T]cccttttctgggcagggatggcat
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN EP300_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -1.11 | 2.63 | 1.95 | n/a | n/a | |||
| SMC3_HUMAN | -0.29 | 1.98 | 2.00 | n/a | n/a | |||
| EP300_HUMAN | -0.37 | 1.67 | 2.07 | n/a | n/a | |||
| CTCF_HUMAN | 0.29 | 1.47 | 1.08 | 1.32 | Weak Concordant | |||
| GCR_HUMAN | -0.42 | 1.25 | 2.17 | n/a | No Hit |
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Motif analysis
