rs17103338 chr14:35439450 G>A
- Sequence
aaagaagagttgttataaatggga[G/A]gtgtgtcctatatgggtctcaggg
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) germinal center CD77+ B cells
- ASB for transcription factors
- PBX1_HUMAN IKZF1_HUMAN IKZF2_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | n/a | 2.83 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.49 | 1.67 | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | -1.06 | 1.65 | 1.00 | n/a | n/a | |||
| FOXP1_HUMAN | -1.79 | 2.73 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood