rs17107274 chr10:80599634 C>G
- Sequence
cagccatcaggcgttgcccgcagg[C/G]ttcaggaccacaagggtggttggc
- ASB in cell types
- PC9 (lung adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 0.48 | 1.15 | 2.04 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Lung, Nerve_Tibial, Spleen, Testis, Thyroid, Whole_Blood