rs17112841 chr10:97498776 T>C
- Sequence
cacatgcgcacctggggcgggtgg[T/C]ggcggcggcgcgggcaccgcgagc
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TCF21_HUMAN PKNX1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | 0.57 | -0.49 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.43 | 0.40 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood