rs17120238 chr1:99335257 A>G
- Sequence
acattggaaccagctagaagttcc[A/G]taaaattcccagcactgtttgcat
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.60 | -0.20 | 1.60 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, hdl cholesterol change with statins, homa-ir, obesity with early age of onset (age >2)