rs17122349 chr14:22777622 T>C

Sequence
tactctgcaaatagagtcatgcag[T/C]ttctgtccggtaggtggaagtacc
ASB in cell types
GM18486 (Lymphoblastoid Cell Lines) IMR90 (lung fibroblasts)
ASB for transcription factors
STAG1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 2.39 0.20 3.4·10-100.41 1.58 n/a n/a
CTCF_HUMAN 1.15 0.15 1.3·10-51.00 1.42 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  comorbid depressive syndrome and alcohol dependence,  neuroblastoma (brain cancer),  sporadic creutzfeldt-jakob disease

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