rs17125090 chr1:63523233 G>A
- Sequence
aggaaacgccaaggcatgaaaagc[G/A]cgcgctggacgttgcgtcaagccc
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) NCI-H2171 (small cell lung carcinoma) neural cell
- ASB for transcription factors
- MAX_HUMAN MXI1_HUMAN MYCN_HUMAN MYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | -1.00 | 2.58 | 1.25 | 4.06 | Concordant | |||
| MXI1_HUMAN | -2.42 | 2.42 | 1.00 | 5.30 | Concordant | |||
| MYCN_HUMAN | -0.37 | 2.44 | 1.00 | 2.43 | Concordant | |||
| MYC_HUMAN | -0.21 | 2.14 | 2.11 | 5.23 | Concordant | |||
| LIN9_HUMAN | 3.18 | -2.85 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina