rs17138519 chr7:116266124 T>C
- Sequence
atccctttactaagtcatgagtca[T/C]attgggatgctggggaactgaggg
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- JUND_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | 2.12 | -1.78 | 1.00 | -1.14 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), hdl cholesterol, ldl cholesterol change with statins, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Heart_Atrial_Appendage, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Testis, Thyroid, Whole_Blood