rs17145316 chr7:21767453 C>T
- Sequence
aaaggagtttgatatgccgttgac[C/T]gttgacatctgctggatgaggcag
- ASB in cell types
- THP-1 (acute monocytic leukemia) IMR-5 (Neuroblastoma) Jurkat (T-cells) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.38 | 1.54 | 1.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.35 | 1.00 | 1.43 | 0.06 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, homa-ir, prop taste detection threshold, salmonella-induced pyroptosis, waist hip ratio