rs17155242 chr8:9109096 A>G

Sequence
ctcttcttccagagttcctgtagg[A/G]cagttggttatctcagcctgtgcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KDM1A_HUMAN IKZF1_HUMAN HTF4_HUMAN SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KDM1A_HUMAN 2.51 -0.77 2.4·10-41.00 2.00 n/a n/a
IKZF1_HUMAN 2.75 -5.21 4.8·10-41.00 2.00 n/a n/a
HTF4_HUMAN 2.22 -1.54 7.8·10-41.00 2.50 1.20 Weak Discordant
SMCA4_HUMAN 2.66 -0.26 0.020.84 2.50 n/a n/a
NCOR1_HUMAN 2.19 -0.42 0.020.93 2.00 n/a n/a
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Motif analysis

HTF4_HUMAN Weak Discordant
HTF4_HUMAN pic

Genetic associations

EMBL-EBI self-reported math ability
GRASP body mass index (bmi),  homa-ir,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus

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