rs17161700 chr7:99379444 A>G

Sequence
agcctgctggctgctctatccaag[A/G]actgcctgagctgggtggggactt
ASB in cell types
CD14+ monocytes RPMI8226 (Plasma cell myeloma)
ASB for transcription factors
STAT1_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 1.36 -0.52 0.031.00 5.00 -3.55 Concordant
IKZF1_HUMAN -3.29 2.00 1.000.04 1.33 n/a n/a
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Motif analysis

STAT1_HUMAN Concordant
STAT1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  hdl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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