rs17162180 chr1:26538163 G>A
- Sequence
tctgtgggttgctgtggcaacctt[G/A]gaccagcagaggccagtaaatagt
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM18505 (female B-cells Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.26 | 1.14 | 1.33 | 0.00 | Weak Discordant | |||
| STAG1_HUMAN | -1.26 | 1.74 | 1.00 | n/a | n/a |
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Motif analysis
